Meta-Analysis of the SLCO1B1 c.521T>C Variant Reveals Slight Influence on the Lipid-Lowering Efficacy of Statins
2015; 35(3): 329-335
Ann Lab Med 2021; 41(2): 171-180
Published online March 1, 2021 https://doi.org/10.3343/alm.2021.41.2.171
Copyright © Korean Journal of Laboratory Medicine.
1Department of Laboratory Medicine, Ewha Womans University College of Medicine, Seoul, Korea; 2Department of Laboratory Medicine, Seoul National University Bundang Hospital, Seongnam, Korea; 3Department of Laboratory Medicine, Sanggye Paik Hospital, School of Medicine, Inje University, Seoul, Korea
Correspondence to: Bo-Moon Shin, M.D., Ph.D.
Department of Laboratory Medicine, Sanggye Paik Hospital, School of Medicine, Inje University, 1342 Dongil-ro, Nowon-gu, Seoul 01757, Korea
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Background: Various methods are used for the diagnosis of Clostridioides difficile infection (CDI). We systematically analyzed and investigated the performance of current laboratory diagnostic methods for CDI.
Methods: We performed systematic review and meta-analysis of studies in PubMed, Web of Science, Cochrane Library, and KoreaMed. The following methods were evaluated: glutamate dehydrogenase (GDH) enzyme immunoassays (GDH EIAs), toxin A and B detection by enzyme immunoassays (toxin AB EIAs), and nucleic acid amplification tests (NAATs) for C. difficile toxin genes. The sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of each method were calculated.
Results: Based on 39 studies, the pooled sensitivities/specificities were 92.7%/94.6%, 57.9%/97.0%, and 90.0%/95.8% for GDH EIAs, toxin AB EIAs, and NAATs, respectively, compared with those of toxigenic culture. The pooled sensitivities of automated EIAs were significantly higher than those of non-automated EIAs for both GDH and toxins A and B. The pooled sensitivity of Xpert C. difficile was significantly higher than those of other NAATs. PPVs increased as CDI prevalence increased, and NPVs were excellent when CDI prevalence was low; at CDI prevalence of 5%, PPV=37%–65% and NPV=97%–100%; at CDI prevalence of 50%, PPV=92%–97% and NPV=65%–98%.
Conclusions: Toxin AB EIAs still show unsatisfactory sensitivity, whereas GDH EIAs and NAATs show relatively high sensitivity. However, toxin AB EIAs are the most specific tests. This study may provide useful information for CDI diagnosis.
Keywords: Clostridioides difficile, Clostridioides difficile infection, Laboratory diagnostic methods, Systematic review, Meta-analysis
Various methods are used to diagnose CDI [1, 2], including detection of glutamate dehydrogenase (GDH)—an antigen secreted by
Many commercialized NAATs, including PCR of toxin A and B genes, have been used. Most assays detect the toxin B gene alone or both toxin A and toxin B genes. A multiplex PCR test that detects genes of multiple pathogens that cause diarrhea, including
We systematically analyzed the current laboratory diagnostic methods for CDI. A literature review and meta-analysis were performed to investigate the usefulness of the diagnostic methods by calculating the sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of each method. This study is an update of the previous meta-analysis  and analyzed the latest Korean data. In addition, it represents the first systematic review and meta-analysis of laboratory diagnostic methods for CDI in Korea.
In 2016, the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) study group published CDI diagnostic methods evaluation based on studies evaluating CDI diagnostic methods published between January 2009 and June 2014 . We applied the same search criteria as those used in that report. We searched PubMed, Web of Science, and Cochrane Library for studies written in English language and published from June 2014 to July 2018, and KoreaMed for Korean studies published from January 2009 to July 2018, with an additional criterion that the study should have been conducted in Korea.
We reviewed data from three diagnostic methods commonly used in clinical laboratories: GDH EIAs, toxin AB EIAs, and NAATs. EIAs are available in a well-type format (results are displayed as a color change that can be detected visually or spectrophotometrically) or a membrane-type format (results can be visually read from a membrane). Some EIAs are performed through an automated process that minimizes the manual process during the test. Among NAATs, Xpert
Reference tests against which index tests were compared were toxigenic culture (TC) and the cell cytotoxicity neutralization assay (CCNA). Except for studies that used
Studies eligible for inclusion had to: (1) describe original research, (2) compare a commercially available index test with a reference test (CCNA or TC), (3) perform the tests on
Studies were excluded if: (1) the reference test was not clearly stated, (2) the reference test was performed only on positive, negative, or discordant samples (to exclude partial verification bias), (3) not all samples were tested by the same reference test, (4) the reference method was a composite of more than one test, (5) the reference method included clinical data for interpretation, (6) the index test was partly used as reference test, (7) the manufacturers’ instructions were not followed for index testing or sample collection, (8) only selected samples were included, (9) insufficient information was provided, (10) clinical human stool samples were not included, (11) no commercial diagnostic test was investigated, or (12) only culture methods were evaluated.
Study eligibility was assessed in a two-step selection process by two independent investigators. Initially, one author identified the potentially relevant studies by screening titles and abstracts, and then two authors evaluated their eligibility for being included in this study through a full text assessment. Inconsistencies were resolved by consensus and by consulting a third investigator.
The following data were extracted from each study by two independent investigators: the numbers of true and false positive and negative results, year of publication, information on the index and reference test methods, and information on the study population and country.
We collected 31 studies from international databases (Fig. 1A) and 15 Korean studies from the international and Korean databases (Fig. 1B). After excluding seven Korean studies from the 31 international ones, we assessed a total of 39 studies (24 foreign and 15 Korean) (Table 2). The details of each study are summarized in Supplemental Data Table S1 [6-44].
For all index tests in all studies, the sensitivity and specificity and their CIs were calculated from the number of true and false positive and negative results reported in these studies. MetaDiSc version 1.4 (Hospital Universtario Ramon Y Cajal, Madrid, Spain) was used to calculate pooled sensitivities and specificities. We compared and evaluated the foreign and Korean studies to assess differences in the diagnostic performance. Pooled sensitivity and specificity for the three test types in the Korean study group were calculated and compared with those of the foreign studies. Among NAATs, sensitivities and specificities were compared separately for Xpert
Pooled sensitivity and specificity were compared using Fisher’s exact test or chi-square test, as appropriate. The data were analyzed using Microsoft Excel 2016 (Microsoft, Redmond, WA, USA). Statistical analysis was performed using MetaDiSc version 1.4 and MedCalc version 10.0 (MedCalc Software Bvba, Ostend, Belgium).
Pooled sensitivities/specificities of index tests and the sensitivity and specificity of the index test in each study are shown in Table 1 and Supplemental Data Table S2, respectively. GDH EIA and NAAT showed sensitivity and specificity of 90% or higher, and toxin AB EIA had the highest specificity but low sensitivity (Table 2). The pooled sensitivity of toxin AB EIAs in Korean studies was significantly higher than that in foreign studies. Meanwhile, the pooled specificities of NAATs in foreign studies were significantly higher than those in Korean studies (Table 3).
As the sensitivity of NAAT was significantly lower in foreign studies than that in Korean studies, the methods commonly used in Korea were analyzed separately. The pooled sensitivity of Xpert
Regarding hypothetical PPVs and NPVs of the categories of index tests at different CDI prevalences, PPVs were low at low CDI prevalence and increased as CDI prevalence increased. In contrast, NPVs were excellent when the CDI prevalence was low and decreased as the prevalence increased. Comparison of PPVs and NPVs of assay types revealed no considerable difference among GDH EIAs, toxin AB EIAs, and NAATs. Among the toxin AB EIAs, the membrane-type toxin AB EIAs had relatively higher PPVs at CDI prevalence of 5%–20% than well-type and automated toxin AB EIAs. NPVs of GDH EIAs, toxin AB EIAs, and NAATs did not differ when the CDI prevalence was 10%–20%. However, at a CDI prevalence of 50%, NPVs of all types of toxin AB EIAs were relatively low (Table 5).
The analysis of 39 studies available in international and Korean databases revealed that the pooled sensitivities were 92.7%, 57.9%, and 90.0% for GDH EIAs, toxin AB EIAs, and NAATs, respectively (Table 2). The pooled sensitivities of GDH EIAs and NAATs were somewhat lower than those reported by the ESCMID group (96% and 95%, respectively) . However, there was no difference between the pooled sensitivities of toxin AB EIAs in our study and that by the ESCMID group (57%) . The pooled specificities were 94.6%, 97.0%, and 95.8% for GDH EIAs, toxin AB EIAs, and NAATs, respectively (Table 2), which were similar to those reported by the ESCMID group (96%, 99%, 98%, respectively) .
Our meta-analysis revealed that GDH EIAs had higher sensitivities and narrower sensitivity ranges than toxin AB EIAs. Toxin AB EIAs had both low sensitivities and the widest sensitivity range. However, toxin AB EIAs were the most specific tests. NAATs had a stable sensitivity of approximately 90% and the narrowest sensitivity ranges (Supplemental Data Table S2).
In the 2016 study on CDI by ESCMID , the sensitivities of toxin AB EIAs were improved when compared with those reported in 2009 . It is assumed that the main reason for this improvement is that toxin A EIAs were replaced with toxin AB EIAs during 2008-2009. In the present study, no particular improvement was observed, although approximately four years had passed since the last ESCMID study. Despite product development and yearly technological advances, the sensitivity of toxin AB EIAs remains unsatisfactory.
We found that the pooled sensitivity of toxin AB EIAs in Korean studies was significantly higher than that in foreign studies. Among three test methods of toxin AB EIAs, membrane-type methods showed most significant
TC and CCNA, which were used as reference tests, have different targets. TC detects the presence of toxigenic
We found that the pooled sensitivities of automated EIAs were significantly higher than those of non-automated EIAs (well-type and membrane-type) for both GDH and toxin A and B. It is believed that automated tests are less prone to errors than nonautomated tests and therefore have higher sensitivity.
Hypothetical PPV and NPV analysis revealed that PPVs were low at low CDI prevalence and increased as CDI prevalence increased. This result is in line with the findings reported in the 2016 ESCMID study (prevalence 5%, PPV 34%–81%; prevalence 50%, PPV 81%–99%) . At a CDI prevalence of 5%–10%, PPVs of toxin AB EIAs were 69%–90%, which were higher than those found in the present study, whereas PPVs of GDH EIAs and NAATs were 34%–54% and 46%–64%, respectively, which were lower than those found in the present study. In contrast, NPVs were 95%–100% for most tests, but decreased to 80% for toxin AB EIAs at a CDI prevalence of 50%, which is higher than the NPVs of toxin AB EIAs in the present study. According to the hypothetical PPVs and NPVs in our meta-analysis, in an epidemic outbreak with a CDI prevalence of 50%, GDH EIAs and NAATs would have PPVs ≥ 95% and NPVs ≥ 90%, and toxin EIAs, which have low sensitivity, would have PPVs ≥ 95% and NPVs around 70%. PPVs of NAATs were the highest, followed by toxin AB EIAs, and GDH EIAs, whereas NPVs remained ≥ 90% for all test methods except membranetype toxin AB EIAs at CDI prevalence < 20%.
There are several limitations in this study. Although 39 studies were reviewed, some test types or index tests were analyzed with a small number of studies. Additionally, some results of the analysis showed inconsistency. Furthermore, as our study was restricted to studies published in English or Korean, there may be language bias.
The data from this study may be useful for CDI diagnosis in clinical microbiology laboratories and for clinicians diagnosing and treating CDI. Furthermore, this study provided basic data for establishing a standard CDI diagnosis guideline, which will greatly help in the development of national guidelines in Korea.
HSC, JSP, and BMS designed the study and analyzed the data. HSC and BMS wrote the draft. All authors reviewed and approved the manuscript.
This work was supported by the Research Program funded by the Korea Centers for Disease Control and Prevention (2017NP280600).