Identification of Potential Genomic Alterations Using Pan-Cancer Cell-Free DNA Next-Generation Sequencing in Patients With Gastric Cancer
2024; 44(2): 164-173
Ann Lab Med 2024; 44(2): 119-121
Published online March 1, 2024 https://doi.org/10.3343/alm.2023.0391
Copyright © Korean Society for Laboratory Medicine.
Department of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea
Correspondence to: Mi-Ae Jang, M.D., Ph.D.
Department of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, 81 Irwon-ro, Gangnam-gu, Seoul 06351, Korea
E-mail: miaeyaho@gmail.com
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Gastric cancer (GC) is a global health challenge. With an estimated 1,089,103 new cases and 768,793 deaths in 2020, GC is the fifth most common type of cancer and the fourth leading cause of death worldwide [1]. Several molecular biomarkers for the treatment of GC, such as
Liquid biopsy for the analysis of cell-free DNA (cfDNA) from non-solid biological materials, including blood, urine, saliva, ascites, and pleural fluid samples, can be used to identify patients with specific tumor mutations more quickly and in a minimally invasive manner. Therefore, liquid biopsy may serve as an alternative to tissue biopsy [6, 7]. Increasing evidence suggests cfDNA may be a biomarker for diagnosis, prognosis, recurrence monitoring, and the identification of targetable alterations to predict sensitivity or resistance to GC treatments [8-10]. Table 1 lists ongoing clinical trials using liquid biopsy in the field of GC registered in ClinicalTrials.gov (https://clinicaltrials.gov/, accessed October 2, 2023). The ASCEND-Gastric study (NCT05224596) will evaluate the sensitivity and specificity of a combined cfDNA and protein biomarker-based assay for GC detection in participants at various clinical stages. Another study investigating the prognostic role of liquid biopsy in patients with locally advanced GC is underway (NCT04943406). Patients with a resectable tumor and below stage IV disease will be enrolled in this study, and liquid biopsies of peritoneal lavage fluid and plasma will be analyzed on multiple occasions, i.e., before curative gastrectomy, at hospital discharge, three months after surgery/at the completion of adjuvant therapy, and at disease recurrence, and overall and disease-free survival determined. In addition, next-generation sequencing (NGS)-based cfDNA assays to evaluate cfDNA positivity as a biomarker for monitoring minimal residual disease after radical gastrectomy (NCT05029869) are ongoing (Table 1). More multicenter studies and prospective evaluations in large clinical trials are necessary for the integration of liquid biopsy into GC diagnosis for precise clinical treatment.
Table 1 . Ongoing clinical trials using liquid biopsy for somatic mutation detection in gastric cancer
Study No. | Study type | Status | Start date | Conditions | Primary outcome measure |
---|---|---|---|---|---|
NCT06036563 | O | N/R | Sep 2023 | Common cancers | Diagnostic accuracy of cfDNA for screening and differentiating common cancers, including gastric cancer, in participants compared with a reference histological test |
NCT06028724 | O | R | May 2023 | Solid tumors | Prevalence of clinically useful mutations in solid tumors, including gastric cancer by a next-generation sequencing-based cfDNA method |
NCT05366881 | O | R | May 2022 | Multiple types of cancer | Differentiation between cancer and non-cancer signals from patients and controls based on cfDNA analysis using a genome-wide methylome enrichment platform |
NCT05227261 | O | R | Apr 2022 | Common cancers of the lung, breast, liver, colorectum, and stomach | Positive/negative predictive values of blood cfDNA in early cancer detection |
NCT05347524 | O | R | Mar 2022 | Gastric cancer with peritoneal metastasis | Sensitivity and specificity of cfDNA methylation-based assay for detecting peritoneal metastasis of gastric cancer |
NCT05513144 | O | R | Dec 2021 | Advanced | Molecular changes over the course of disease progression may serve as a prognostic marker for diagnosis and treatment response |
NCT05027347 | O | R | Oct 2021 | Early-stage gastric cancer | Sensitivity and specificity of a cfDNA assay for detecting early-stage gastric cancer |
NCT05029869 | O | R | Oct 2021 | Gastric cancer after gastrectomy | Sensitivity of a cfDNA assay for monitoring minimal residual disease |
NCT05059444 | O | R | Sep 2021 | Early-stage solid tumors treated | Detection of distant recurrence-free intervals in individuals treated for early-stage solid tumors |
NCT05224596 | O | R | Jan 2021 | Gastric cancer | Sensitivity and specificity of a cfDNA methylation-based assay for detecting gastric cancer |
NCT04253106 | I | R | Nov 2020 | Hereditary diffuse gastric cancer | Percentage of patients with somatic mutations or methylation profiles using liquid biopsy |
NCT04484636 | I | R | Oct 2020 | Gastrointestinal cancer | Measurement of genomic profiles |
NCT04943406 | O | R | May 2020 | Locally advanced gastric cancer | Overall and disease-free survival based on ctDNA positivity in peritoneal lavage and peripheral blood of patients with locally advanced gastric cancer |
NCT03957564 | I | R | May 2019 | Gastric cancer, gastro-esophageal junction cancer | Detection of circulating tumor cells and cfDNA before and after neoadjuvant chemotherapy and surgery |
The information of clinical trials was obtained from http://clinicaltrials.gov (accessed on October 2, 2023).
Abbreviations: O, observational; I, interventional; R, recruiting; N/R, not yet recruiting; cfDNA, cell-free DNA.
In this issue of
Liquid biopsy is currently applied in clinical practice [12, 13]. While tissue biopsy is an important method for detecting somatic mutations, the development of cfDNA assays and their implementation in clinical practice should be recognized as a valuable option for patients who do not have adequate tissue quantities for mutation testing or who refuse or are unable to undergo tissue biopsy. In particular, NGS-based molecular cfDNA profiling may be a valuable tool for the diagnostic and prognostic assessment of patients with GC, allowing a broader use of currently approved targeted therapies and ensuring proper treatment for each patient.
Jang MA wrote the manuscript and approved the final manuscript.
None declared.